coord2region.cli

Command-line interface for Coord2Region.

The CLI provides dedicated sub-commands tailored to the different capabilities exposed by the pipeline. Coordinate-focused commands can map MNI coordinates to atlas labels, retrieve related studies, generate summaries, render images and combine these insights. Region-based commands resolve atlas region names to coordinates before performing the same operations.

Functions

run_from_config(→ None)	Execute the pipeline using a YAML configuration file.
create_parser(→ argparse.ArgumentParser)	Create the top-level argument parser for the CLI.
main(→ None)	Entry point for the coord2region console script.

Module Contents

coord2region.cli.run_from_config(path: str, *, dry_run: bool = False) → None

Execute the pipeline using a YAML configuration file.

coord2region.cli.create_parser() → ArgumentParser

Create the top-level argument parser for the CLI.

coord2region.cli.main(argv: Sequence[str] | None = None) → None

Entry point for the coord2region console script.